mdadash.backend.analyses.ramachandran

Ramachandran plot (Dihedral angles analysis)

Classes

RamachandranPlot()

Ramachandran Plot

class mdadash.backend.analyses.ramachandran.RamachandranPlot

Bases: WidgetBase

Ramachandran Plot

This widget uses MDAnalysis.analysis.dihedrals.Ramachandran for dihedral angles analysis and creates a Ramachandran plot.

Inputs

Selection

MDAnalysis selection phrase

Default: protein

Show reference

Show allowed and marginally allowed regions

Default: True

Custom title

Custom title for the plot

Default: ‘’

Output

Here is an example output plot of this widget:

description = 'Dihedral angles analysis using Ramachandran plot'

name = 'Ramachandran Plot'

on_input_change(attribute, _old_value, new_value)

on_input_change() handler

on_post_connect()

on_post_connect() handler

run_every_frame()

run_every_frame() handler